Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| marr family winged helix-turn-helix transcriptional regulator | BJD13_RS09320 | Not Available | Negative | 1747419 - 1747859 | 16255.8 |
| arac family transcriptional regulator | BJD13_RS09325 | Not Available | Positive | 1747982 - 1748833 | 30743.9 |
| dna topoisomerase iv subunit a | BJD13_RS09330 | Not Available | Positive | 1748895 - 1751138 | 82178.7 |
| thiopurine s-methyltransferase | BJD13_RS09335 | Not Available | Positive | 1751707 - 1752363 | 24418.1 |
| bacterioferritin | BJD13_RS09340 | Not Available | Negative | 1752627 - 1753112 | 18752.4 |
| penicillin acylase family protein | BJD13_RS09345 | Not Available | Positive | 1753259 - 1755673 | 86768.3 |
| tonb-dependent siderophore receptor | BJD13_RS09350 | Not Available | Positive | 1756090 - 1758228 | 78834.1 |
| type iii secretion-associated outer membrane-bound protein hpam | BJD13_RS09355 | Not Available | Positive | 1758670 - 1759722 | 38539.5 |
| asparagine synthase b | BJD13_RS09360 | Not Available | Negative | 1759790 - 1761484 | 62557.0 |
| succinyl-diaminopimelate desuccinylase | BJD13_RS09365 | Not Available | Negative | 1761779 - 1762909 | 40346.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
