Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhomboid family intramembrane serine protease | BJD13_RS09270 | Not Available | Negative | 1734557 - 1735165 | 22844.5 |
| oligopeptide:h+ symporter | BJD13_RS09275 | Not Available | Negative | 1735173 - 1736738 | 56894.7 |
| m14 family metallopeptidase | BJD13_RS09280 | Not Available | Positive | 1737097 - 1738866 | 65490.7 |
| beta-glucosidase family protein | BJD13_RS09285 | Not Available | Positive | 1739046 - 1741235 | 77890.6 |
| Trna-leu | Not Available | Not Available | Positive | 1741376 - 1741462 | Not Available |
| sty0301 family protein | BJD13_RS09295 | Not Available | Negative | 1741594 - 1742013 | 14776.5 |
| hypothetical protein | BJD13_RS09300 | Not Available | Negative | 1742169 - 1742630 | 16550.9 |
| dha2 family efflux mfs transporter permease subunit | BJD13_RS09305 | Not Available | Negative | 1743114 - 1744694 | 56524.7 |
| efflux rnd transporter periplasmic adaptor subunit | BJD13_RS09310 | Not Available | Negative | 1744701 - 1745894 | 42476.6 |
| adec/adek/oprm family multidrug efflux complex outer membrane factor | BJD13_RS09315 | Not Available | Negative | 1745905 - 1747395 | 52405.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
