Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nfed family protein | BJD13_RS24965 | Not Available | Negative | 1723861 - 1723955 | 3673.44 |
| fumarate hydratase | BJD13_RS09225 | Not Available | Negative | 1723993 - 1725510 | 54796.1 |
| abc transporter atp-binding protein | BJD13_RS09230 | Not Available | Positive | 1725809 - 1727689 | 69977.6 |
| ferredoxin--nadp reductase | BJD13_RS09235 | Not Available | Positive | 1727888 - 1728667 | 29457.3 |
| glutathione peroxidase | BJD13_RS09240 | Not Available | Negative | 1728815 - 1729300 | 17936.3 |
| m3 family metallopeptidase | BJD13_RS09245 | Not Available | Positive | 1729674 - 1731872 | 80526.1 |
| marr family winged helix-turn-helix transcriptional regulator | BJD13_RS09250 | Not Available | Negative | 1732105 - 1732605 | 18441.5 |
| duf3298 and duf4163 domain-containing protein | BJD13_RS09255 | Not Available | Negative | 1732672 - 1733517 | 29672.3 |
| gnat family n-acetyltransferase | BJD13_RS09260 | Not Available | Negative | 1733569 - 1733838 | 10020.7 |
| hypothetical protein | BJD13_RS09265 | Not Available | Positive | 1734065 - 1734253 | 6720.43 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
