Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf6116 family protein | BJD13_RS09170 | Not Available | Positive | 1716466 - 1716681 | 8040.02 |
| tatd family hydrolase | BJD13_RS09175 | Not Available | Positive | 1716681 - 1717448 | 28183.9 |
| thif family adenylyltransferase | BJD13_RS09180 | Not Available | Negative | 1717505 - 1718335 | 29656.8 |
| cytochrome c | BJD13_RS09185 | Not Available | Positive | 1718410 - 1718838 | 15547.8 |
| glycine zipper 2tm domain-containing protein | BJD13_RS09190 | Not Available | Positive | 1718971 - 1719450 | 16330.4 |
| cold-shock protein | BJD13_RS09195 | Not Available | Negative | 1719589 - 1719804 | 7945.46 |
| duf456 domain-containing protein | BJD13_RS09200 | Not Available | Positive | 1720032 - 1720517 | 16853.3 |
| phospholipase a | BJD13_RS09205 | Not Available | Positive | 1720777 - 1721910 | 42404.5 |
| carbonic anhydrase | BJD13_RS09215 | Not Available | Negative | 1722292 - 1722930 | 22509.3 |
| glutathione s-transferase family protein | BJD13_RS09220 | Not Available | Negative | 1723118 - 1723753 | 23607.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
