Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS09060 | Not Available | Negative | 1690147 - 1690395 | 8634.34 |
| diguanylate cyclase | BJD13_RS09065 | Not Available | Positive | 1690595 - 1692250 | 59893.0 |
| hypothetical protein | BJD13_RS09070 | Not Available | Negative | 1692443 - 1692748 | 10836.5 |
| sensor domain-containing diguanylate cyclase | BJD13_RS09075 | Not Available | Positive | 1692843 - 1693817 | 35295.1 |
| efflux transporter outer membrane subunit | BJD13_RS09080 | Not Available | Negative | 1694073 - 1695497 | 51472.9 |
| sdr family oxidoreductase | BJD13_RS09085 | Not Available | Negative | 1695491 - 1696222 | 26024.2 |
| efflux rnd transporter permease subunit | BJD13_RS09090 | Not Available | Negative | 1696265 - 1699441 | 113957.0 |
| efflux rnd transporter periplasmic adaptor subunit | BJD13_RS09095 | Not Available | Negative | 1699620 - 1700810 | 42899.0 |
| sdr family nad(p)-dependent oxidoreductase | BJD13_RS09100 | Not Available | Negative | 1700807 - 1701580 | 26629.5 |
| hypothetical protein | BJD13_RS09105 | Not Available | Negative | 1701577 - 1701804 | 8166.68 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
