Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein assembly factor bame | BJD13_RS09015 | Not Available | Positive | 1682067 - 1682462 | 14908.8 |
| rnfh family protein | BJD13_RS09020 | Not Available | Negative | 1682731 - 1683018 | 10436.7 |
| type ii toxin-antitoxin system rata family toxin | BJD13_RS09025 | Not Available | Negative | 1683020 - 1683451 | 16074.3 |
| ssra-binding protein smpb | BJD13_RS09030 | Not Available | Positive | 1683512 - 1684015 | 19270.1 |
| s8 family peptidase | BJD13_RS09035 | Not Available | Negative | 1684155 - 1686602 | 88965.0 |
| Tmrna,resume consensus sequence (at 87): tttagttgccaacgatga | Not Available | Not Available | Positive | 1686738 - 1687134 | Not Available |
| hypothetical protein | BJD13_RS09045 | Not Available | Negative | 1687201 - 1687422 | 7955.7 |
| nfed family protein | BJD13_RS09055 | Not Available | Positive | 1687941 - 1689224 | 47288.2 |
| asparagine synthase-related protein | BJD13_RS25565 | Not Available | Positive | 1689343 - 1689720 | 14864.0 |
| hypothetical protein | BJD13_RS24960 | Not Available | Negative | 1689892 - 1690068 | 6210.25 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
