Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tolc family protein | BJD13_RS08965 | Not Available | Positive | 1669520 - 1670923 | 51026.6 |
| hypothetical protein | BJD13_RS08970 | Not Available | Positive | 1671370 - 1671564 | 7314.57 |
| prephenate dehydrogenase | BJD13_RS08975 | Not Available | Negative | 1671739 - 1672860 | 40704.0 |
| pyridoxal kinase | BJD13_RS08980 | Not Available | Negative | 1672857 - 1673765 | 31926.3 |
| molecular chaperone dnaj | BJD13_RS08985 | Not Available | Negative | 1674291 - 1675418 | 40305.5 |
| molecular chaperone dnak | BJD13_RS08990 | Not Available | Negative | 1675561 - 1677489 | 68827.1 |
| nucleotide exchange factor grpe | BJD13_RS08995 | Not Available | Negative | 1677631 - 1678149 | 18939.3 |
| heat-inducible transcriptional repressor hrca | BJD13_RS09000 | Not Available | Negative | 1678248 - 1679279 | 37474.4 |
| dna repair protein recn | BJD13_RS09005 | Not Available | Positive | 1679417 - 1681081 | 59602.5 |
| ferric iron uptake transcriptional regulator | BJD13_RS09010 | Not Available | Negative | 1681552 - 1681962 | 15766.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
