Xanthomonas perforans strain LH3

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas perforans strain LH3 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates its mobility. This strain is known to possess a single replicon, indicating a streamlined genomic structure that can impact its adaptability and replication efficiency. Xanthomonas perforans is particularly significant due to its pathogenicity in key agricultural crops. It is a known causative agent of bacterial spot disease in tomato plants (Solanum lycopersicum), which can lead to substantial yield losses. Additionally, this strain has been associated with Arabidopsis thaliana, a model organism in plant biology, suggesting its utility in studies related to plant-microbe interactions. The accession number for this strain is NZ_CP018475.1, which provides a reference point for researchers interested in genomic studies or comparative analyses within the Xanthomonas genus. From an ecological perspective, the presence of Xanthomonas perforans in important crops like tomato highlights the potential impact of bacterial pathogens on agricultural ecosystems. The interactions between this bacterium and its host plants can influence plant health, agricultural practices, and food security. Understanding the biology and behavior of Xanthomonas perforans is crucial for developing effective management strategies to mitigate the effects of bacterial spot disease in tomato and potentially other hosts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas perforans
Strainstrain LH3

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas perforans strain LH3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Solanum lycopersicum, Arabidopsis thaliana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas perforans strain LH3 chromosome, complete genome.

Gene Summary

Adenine Count

872906 bp

Thymine Count

873101 bp

Guanine Count

1612744 bp

Cytosine Count

1611142 bp

Genome Length

4969893 bp

Protein-coding Genes

4115 genes

Non-Coding Genes

146 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tolc family proteinBJD13_RS08965Not AvailablePositive1669520 - 167092351026.6
hypothetical proteinBJD13_RS08970Not AvailablePositive1671370 - 16715647314.57
prephenate dehydrogenaseBJD13_RS08975Not AvailableNegative1671739 - 167286040704.0
pyridoxal kinaseBJD13_RS08980Not AvailableNegative1672857 - 167376531926.3
molecular chaperone dnajBJD13_RS08985Not AvailableNegative1674291 - 167541840305.5
molecular chaperone dnakBJD13_RS08990Not AvailableNegative1675561 - 167748968827.1
nucleotide exchange factor grpeBJD13_RS08995Not AvailableNegative1677631 - 167814918939.3
heat-inducible transcriptional repressor hrcaBJD13_RS09000Not AvailableNegative1678248 - 167927937474.4
dna repair protein recnBJD13_RS09005Not AvailablePositive1679417 - 168108159602.5
ferric iron uptake transcriptional regulatorBJD13_RS09010Not AvailableNegative1681552 - 168196215766.8

Displaying genes 1491 – 1500 of 4261 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial spot of tomatoCausesPMC6946519
Bacterial spot of tomatoCausesPMC12211302
Pith necrosisCausesPMC12847849
Bacterial spotCausesPMC8597037
Bacterial spot of tomatoCausesPMC8597037

Displaying health effects 1 – 5 of 5 in total