Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fe-s cluster assembly atpase sufc | BJD13_RS01965 | Not Available | Negative | 76745 - 77509 | 27688.4 |
| fe-s cluster assembly protein sufb | BJD13_RS01970 | Not Available | Negative | 77665 - 79122 | 53882.9 |
| suf system fe-s cluster assembly regulator | BJD13_RS01975 | Not Available | Negative | 79138 - 79596 | 16249.8 |
| set domain-containing protein | BJD13_RS01980 | Not Available | Positive | 79769 - 80236 | 17700.0 |
| type 1 glutamine amidotransferase domain-containing protein | BJD13_RS01985 | Not Available | Positive | 80339 - 80881 | 19367.8 |
| duf1439 domain-containing protein | BJD13_RS01990 | Not Available | Negative | 80994 - 81590 | 20959.3 |
| hypothetical protein | BJD13_RS01995 | Not Available | Negative | 81646 - 82188 | 18733.1 |
| duf3861 family protein | BJD13_RS02000 | Not Available | Negative | 82245 - 82586 | 12880.3 |
| m23 family metallopeptidase | BJD13_RS02005 | Not Available | Negative | 82644 - 83285 | 22866.7 |
| hu family dna-binding protein | BJD13_RS02010 | Not Available | Negative | 83392 - 83817 | 14639.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
