Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transporter | BJD13_RS08820 | Not Available | Negative | 1637322 - 1638167 | 29842.7 |
| duf2058 domain-containing protein | BJD13_RS08825 | Not Available | Negative | 1638498 - 1639232 | 26419.2 |
| slyx family protein | BJD13_RS08830 | Not Available | Negative | 1639251 - 1639487 | 8825.43 |
| udp-glucose dehydrogenase family protein | BJD13_RS08835 | Not Available | Negative | 1639480 - 1640829 | 48646.0 |
| fkbp-type peptidyl-prolyl cis-trans isomerase n-terminal domain-containing protein | BJD13_RS08840 | Not Available | Negative | 1640855 - 1641778 | 32397.6 |
| hypothetical protein | BJD13_RS25395 | Not Available | Negative | 1641696 - 1641881 | 6413.48 |
| glutathione peroxidase | BJD13_RS08845 | Not Available | Negative | 1641912 - 1642469 | 20268.5 |
| hypothetical protein | BJD13_RS08850 | Not Available | Positive | 1642603 - 1642851 | 8714.35 |
| gntr family transcriptional regulator | BJD13_RS08855 | Not Available | Positive | 1642854 - 1643216 | 13650.5 |
| abc transporter atp-binding protein | BJD13_RS08860 | Not Available | Positive | 1643213 - 1644088 | 32441.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
