Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-leu | Not Available | Not Available | Positive | 1623513 - 1623599 | Not Available |
| platelet-activating factor acetylhydrolase ib subunit | BJD13_RS08760 | Not Available | Negative | 1623946 - 1625469 | 55904.5 |
| acyl-coa dehydrogenase family protein | BJD13_RS08780 | Not Available | Negative | 1626046 - 1627227 | 42047.5 |
| arsr/smtb family transcription factor | BJD13_RS08785 | Not Available | Positive | 1627316 - 1628311 | 36006.1 |
| homocysteine s-methyltransferase family protein | BJD13_RS08790 | Not Available | Positive | 1628308 - 1629438 | 40061.3 |
| methionine synthase | BJD13_RS08795 | Not Available | Positive | 1629605 - 1632358 | 101847.0 |
| age family epimerase/isomerase | BJD13_RS08800 | Not Available | Negative | 1632499 - 1633704 | 46665.2 |
| carbohydrate kinase family protein | BJD13_RS08805 | Not Available | Negative | 1633701 - 1634687 | 34774.3 |
| l-fucose:h+ symporter permease | BJD13_RS08810 | Not Available | Negative | 1634684 - 1635994 | 46469.8 |
| laci family dna-binding transcriptional regulator | BJD13_RS08815 | Not Available | Negative | 1636008 - 1637183 | 40995.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
