Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphate abc transporter permease subunit pstc | BJD13_RS08700 | Not Available | Positive | 1610671 - 1611645 | 34840.5 |
| phosphate abc transporter permease psta | BJD13_RS08705 | Not Available | Positive | 1611645 - 1612514 | 30938.5 |
| phosphate abc transporter atp-binding protein pstb | BJD13_RS08710 | Not Available | Positive | 1612537 - 1613367 | 31150.6 |
| phosphate signaling complex protein phou | BJD13_RS08715 | Not Available | Positive | 1613496 - 1614206 | 26393.5 |
| rcnb family protein | BJD13_RS08720 | Not Available | Positive | 1614317 - 1614724 | 15813.2 |
| ribonuclease t | BJD13_RS08725 | Not Available | Positive | 1614982 - 1615623 | 23287.8 |
| ligand-binding sensor domain-containing diguanylate cyclase | BJD13_RS08730 | Not Available | Negative | 1615761 - 1618796 | 111873.0 |
| 23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmb | BJD13_RS08740 | Not Available | Negative | 1619058 - 1619807 | 26388.6 |
| gfa family protein | BJD13_RS08745 | Not Available | Negative | 1620116 - 1620589 | 16982.9 |
| ribonuclease r | BJD13_RS08750 | Not Available | Negative | 1620863 - 1623391 | 93222.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
