Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional 23s rrna (guanine(2069)-n(7))-methyltransferase rlmk/23s rrna (guanine(2445)-n(2))-methyltransferase rlml | BJD13_RS08600 | Not Available | Negative | 1592367 - 1594502 | 78411.4 |
| hypothetical protein | BJD13_RS08605 | Not Available | Negative | 1594499 - 1594690 | 6600.1 |
| nfed family protein | BJD13_RS08610 | Not Available | Negative | 1594687 - 1595379 | 23553.4 |
| gnat family n-acetyltransferase | BJD13_RS08615 | Not Available | Negative | 1595480 - 1595986 | 17588.2 |
| alpha/beta hydrolase | BJD13_RS08620 | Not Available | Negative | 1596027 - 1596554 | 18624.6 |
| mosc domain-containing protein | BJD13_RS08625 | Not Available | Negative | 1596551 - 1597042 | 16979.8 |
| n-acetylmuramoyl-l-alanine amidase | BJD13_RS08630 | Not Available | Positive | 1597066 - 1597641 | 21772.9 |
| duf1684 domain-containing protein | BJD13_RS08635 | Not Available | Negative | 1597861 - 1598814 | 34683.0 |
| sulfurtransferase | BJD13_RS08640 | Not Available | Negative | 1598903 - 1599775 | 30652.3 |
| coa pyrophosphatase | BJD13_RS08645 | Not Available | Negative | 1599772 - 1600575 | 28992.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
