Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fusc family protein | BJD13_RS08550 | Not Available | Positive | 1581014 - 1583194 | 77099.7 |
| kynureninase | BJD13_RS08555 | Not Available | Positive | 1583228 - 1584499 | 45901.8 |
| fad-dependent oxidoreductase | BJD13_RS08560 | Not Available | Positive | 1584671 - 1586038 | 50890.7 |
| Ncrna_class:other | Not Available | Not Available | Positive | 1586278 - 1586354 | Not Available |
| exodeoxyribonuclease i | BJD13_RS08570 | Not Available | Positive | 1586502 - 1587947 | 54939.2 |
| duf2461 domain-containing protein | BJD13_RS08575 | Not Available | Positive | 1587944 - 1588630 | 26896.8 |
| aldo/keto reductase | BJD13_RS08580 | Not Available | Positive | 1588630 - 1589622 | 35996.1 |
| duf2939 domain-containing protein | BJD13_RS08585 | Not Available | Positive | 1589664 - 1590215 | 20131.6 |
| 5'-nucleotidase | BJD13_RS08590 | Not Available | Negative | 1590246 - 1591202 | 34882.0 |
| nad kinase | BJD13_RS08595 | Not Available | Negative | 1591370 - 1592146 | 28445.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
