Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s18 | BJD13_RS08450 | Not Available | Negative | 1569047 - 1569277 | 8959.88 |
| 30s ribosomal protein s6 | BJD13_RS08455 | Not Available | Negative | 1569289 - 1569720 | 16356.1 |
| hesb/isca family protein | BJD13_RS08460 | Not Available | Negative | 1570128 - 1570466 | 11919.9 |
| asparagine--trna ligase | BJD13_RS08470 | Not Available | Positive | 1570671 - 1572065 | 51884.8 |
| hypothetical protein | BJD13_RS08475 | Not Available | Positive | 1572126 - 1572323 | 6975.69 |
| hypothetical protein | BJD13_RS08480 | Not Available | Positive | 1572320 - 1572625 | 11127.0 |
| hypothetical protein | BJD13_RS08485 | Not Available | Positive | 1572622 - 1572948 | 11887.8 |
| fmn-binding negative transcriptional regulator | BJD13_RS08490 | Not Available | Positive | 1572950 - 1573585 | 23568.6 |
| hypothetical protein | BJD13_RS25225 | Not Available | Negative | 1573726 - 1573932 | 7207.82 |
| luxr c-terminal-related transcriptional regulator | BJD13_RS08495 | Not Available | Negative | 1573922 - 1574635 | 25831.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
