Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4198 domain-containing protein | BJD13_RS01915 | Not Available | Negative | 66839 - 67642 | 29223.9 |
| duf2271 domain-containing protein | BJD13_RS01920 | Not Available | Negative | 67824 - 68339 | 18250.8 |
| pepsy-associated tm helix domain-containing protein | BJD13_RS01925 | Not Available | Negative | 68361 - 69002 | 23827.1 |
| tetratricopeptide repeat protein | BJD13_RS01930 | Not Available | Negative | 69010 - 69768 | 27250.5 |
| fe2+-dependent dioxygenase | BJD13_RS01935 | Not Available | Negative | 69761 - 70447 | 25172.8 |
| tonb-dependent receptor | BJD13_RS01940 | Not Available | Negative | 70496 - 72814 | 83527.8 |
| non-heme iron oxygenase ferredoxin subunit | BJD13_RS01945 | Not Available | Negative | 73163 - 73492 | 12236.2 |
| gnat family n-acetyltransferase | BJD13_RS01950 | Not Available | Negative | 73489 - 74028 | 20007.0 |
| cysteine desulfurase | BJD13_RS01955 | Not Available | Negative | 74242 - 75486 | 45080.3 |
| fe-s cluster assembly protein sufd | BJD13_RS01960 | Not Available | Negative | 75483 - 76745 | 44864.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
