Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c maturation protein ccme | BJD13_RS08205 | Not Available | Positive | 1509103 - 1509573 | 16877.4 |
| heme lyase ccmf/nrfe family subunit | BJD13_RS08210 | Not Available | Positive | 1509637 - 1511625 | 70999.4 |
| dsbe family thiol:disulfide interchange protein | BJD13_RS08215 | Not Available | Positive | 1511622 - 1512164 | 19361.8 |
| cytochrome c-type biogenesis protein | BJD13_RS08220 | Not Available | Positive | 1512161 - 1512658 | 18926.1 |
| tetratricopeptide repeat protein | BJD13_RS08225 | Not Available | Positive | 1512652 - 1513359 | 24920.0 |
| pas domain-containing sensor histidine kinase | BJD13_RS08230 | Not Available | Negative | 1513719 - 1515791 | 74627.5 |
| atpase domain-containing protein | BJD13_RS08235 | Not Available | Negative | 1515778 - 1517295 | 55679.4 |
| hypothetical protein | BJD13_RS08240 | Not Available | Positive | 1517234 - 1517467 | 8796.91 |
| response regulator | BJD13_RS08245 | Not Available | Positive | 1517593 - 1517937 | 12460.2 |
| pas domain-containing sensor histidine kinase | BJD13_RS08250 | Not Available | Negative | 1518052 - 1520907 | 104496.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
