Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar 3,4-ketoisomerase | BJD13_RS08150 | Not Available | Negative | 1501167 - 1501604 | 16524.6 |
| cytochrome b | BJD13_RS08155 | Not Available | Positive | 1501909 - 1502529 | 22215.0 |
| hypothetical protein | BJD13_RS08160 | Not Available | Positive | 1502613 - 1503956 | 48482.1 |
| c-type cytochrome | BJD13_RS08165 | Not Available | Positive | 1503983 - 1504375 | 13623.5 |
| hypothetical protein | BJD13_RS08175 | Not Available | Positive | 1504792 - 1505514 | 26290.3 |
| sigma-70 family rna polymerase sigma factor | BJD13_RS08180 | Not Available | Positive | 1505566 - 1506159 | 22234.5 |
| zf-hc2 domain-containing protein | BJD13_RS08185 | Not Available | Positive | 1506156 - 1506812 | 23106.9 |
| s8 family peptidase | BJD13_RS08190 | Not Available | Positive | 1506809 - 1508134 | 45652.4 |
| heme abc transporter permease ccmc | BJD13_RS08195 | Not Available | Positive | 1508145 - 1508903 | 28116.0 |
| heme exporter protein ccmd | BJD13_RS08200 | Not Available | Positive | 1508900 - 1509106 | 7807.59 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
