Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| llm class flavin-dependent oxidoreductase | BJD13_RS08050 | Not Available | Negative | 1478861 - 1479862 | 36123.2 |
| mfs transporter | BJD13_RS08055 | Not Available | Positive | 1480209 - 1481624 | 50074.4 |
| atp-binding cassette domain-containing protein | BJD13_RS08060 | Not Available | Negative | 1481786 - 1483507 | 61820.1 |
| hpr(ser) kinase/phosphatase | BJD13_RS08065 | Not Available | Negative | 1483601 - 1484659 | 37704.9 |
| b12-binding domain-containing radical sam protein | BJD13_RS08070 | Not Available | Positive | 1484791 - 1486344 | 57357.4 |
| nucleotidyltransferase family protein | BJD13_RS08075 | Not Available | Positive | 1486400 - 1487614 | 45559.3 |
| Ncrna_class:other | Not Available | Not Available | Positive | 1487630 - 1487706 | Not Available |
| glycosyltransferase family 4 protein | BJD13_RS08085 | Not Available | Negative | 1487838 - 1488959 | 40716.3 |
| glycosyltransferase family 4 protein | BJD13_RS08090 | Not Available | Negative | 1488956 - 1490086 | 41507.0 |
| class i sam-dependent methyltransferase | BJD13_RS08095 | Not Available | Negative | 1490220 - 1490918 | 25243.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
