Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ctp synthase | BJD13_RS07995 | Not Available | Negative | 1467011 - 1468675 | 61508.6 |
| hypothetical protein | BJD13_RS08000 | Not Available | Negative | 1468990 - 1469232 | 8395.96 |
| dna topoisomerase iv subunit b | BJD13_RS08005 | Not Available | Positive | 1469397 - 1471286 | 69485.1 |
| s10 family peptidase | BJD13_RS08010 | Not Available | Positive | 1471670 - 1473175 | 54853.0 |
| ydcf family protein | BJD13_RS08015 | Not Available | Negative | 1473369 - 1474130 | 28223.3 |
| inorganic phosphate transporter | BJD13_RS08020 | Not Available | Negative | 1474237 - 1475364 | 39156.9 |
| duf47 domain-containing protein | BJD13_RS08025 | Not Available | Negative | 1475374 - 1476000 | 23755.8 |
| hemolysin family protein | BJD13_RS08035 | Not Available | Positive | 1476273 - 1477613 | 48823.2 |
| exopolysaccharide biosynthesis protein | BJD13_RS08040 | Not Available | Positive | 1477597 - 1478265 | 24511.6 |
| pyridoxamine 5'-phosphate oxidase family protein | BJD13_RS08045 | Not Available | Negative | 1478300 - 1478800 | 18061.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
