Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | BJD13_RS07945 | Not Available | Negative | 1458948 - 1459625 | 24224.4 |
| 5'/3'-nucleotidase sure | BJD13_RS07950 | Not Available | Negative | 1459622 - 1460401 | 27404.3 |
| smr/muts family protein | BJD13_RS07955 | Not Available | Positive | 1460501 - 1461043 | 19883.8 |
| trna pseudouridine(13) synthase trud | BJD13_RS07960 | Not Available | Negative | 1461294 - 1462403 | 40447.1 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | BJD13_RS07965 | Not Available | Negative | 1462517 - 1463017 | 17518.0 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | BJD13_RS07970 | Not Available | Negative | 1463021 - 1463815 | 27562.1 |
| cell division protein ftsb | BJD13_RS07975 | Not Available | Negative | 1463812 - 1464177 | 13552.1 |
| phosphopyruvate hydratase | BJD13_RS07980 | Not Available | Negative | 1464181 - 1465473 | 45938.2 |
| hypothetical protein | BJD13_RS07985 | Not Available | Negative | 1465598 - 1465840 | 8104.49 |
| 3-deoxy-8-phosphooctulonate synthase | BJD13_RS07990 | Not Available | Negative | 1465957 - 1466787 | 29743.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
