Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dnaa regulatory inactivator hda | BJD13_RS01865 | Not Available | Positive | 56321 - 57028 | 25143.5 |
| n-acetylmuramate alpha-1-phosphate uridylyltransferase muru | BJD13_RS01870 | Not Available | Negative | 57120 - 57833 | 25444.8 |
| aminoglycoside phosphotransferase family protein | BJD13_RS01875 | Not Available | Negative | 57830 - 58849 | 37802.5 |
| glsb/yeaq/ymge family stress response membrane protein | BJD13_RS01880 | Not Available | Negative | 58907 - 59179 | 9644.17 |
| m20 family metallopeptidase | BJD13_RS01885 | Not Available | Negative | 59687 - 61180 | 53495.1 |
| comea family dna-binding protein | BJD13_RS01890 | Not Available | Positive | 61338 - 61712 | 13215.3 |
| hutd family protein | BJD13_RS01895 | Not Available | Positive | 62139 - 62996 | 30554.9 |
| ef-hand domain-containing protein | BJD13_RS01900 | Not Available | Positive | 63150 - 63815 | 22331.2 |
| flavodoxin domain-containing protein | BJD13_RS01905 | Not Available | Negative | 63986 - 65800 | 64958.4 |
| fad:protein fmn transferase | BJD13_RS01910 | Not Available | Negative | 65797 - 66771 | 34294.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
