Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phoh family protein | BJD13_RS07790 | Not Available | Positive | 1430129 - 1431526 | 52314.5 |
| hypothetical protein | BJD13_RS07795 | Not Available | Positive | 1431526 - 1432008 | 17307.5 |
| yoak family protein | BJD13_RS07800 | Not Available | Positive | 1432015 - 1432686 | 23297.0 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | BJD13_RS07805 | Not Available | Positive | 1432724 - 1433533 | 28003.7 |
| alpha/beta fold hydrolase | BJD13_RS07810 | Not Available | Positive | 1433530 - 1434411 | 32106.5 |
| Trna-arg | Not Available | Not Available | Positive | 1434452 - 1434528 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 1434630 - 1434706 | Not Available |
| deda family protein/thiosulfate sulfurtransferase glpe | BJD13_RS07825 | Not Available | Negative | 1434870 - 1435862 | 35420.4 |
| lysr family transcriptional regulator | BJD13_RS07830 | Not Available | Negative | 1435907 - 1436851 | 34068.9 |
| pirin family protein | BJD13_RS07835 | Not Available | Positive | 1436983 - 1437684 | 25550.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
