Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase | BJD13_RS07740 | Not Available | Positive | 1422918 - 1423550 | 21987.2 |
| galactonate dehydratase | BJD13_RS07745 | Not Available | Positive | 1423547 - 1424695 | 41958.3 |
| smp-30/gluconolactonase/lre family protein | BJD13_RS07750 | Not Available | Positive | 1424689 - 1425600 | 33480.4 |
| 2-dehydro-3-deoxygalactonokinase | BJD13_RS07755 | Not Available | Positive | 1425597 - 1426475 | 30734.9 |
| ferredoxin fdxa | BJD13_RS07760 | Not Available | Positive | 1426559 - 1426882 | 11806.0 |
| hypothetical protein | BJD13_RS07765 | Not Available | Negative | 1427002 - 1427520 | 17514.8 |
| 4-hydroxy-tetrahydrodipicolinate synthase | BJD13_RS07770 | Not Available | Negative | 1427537 - 1428445 | 31064.3 |
| glycine cleavage system protein r | BJD13_RS07775 | Not Available | Positive | 1428539 - 1429165 | 22935.6 |
| ribonuclease e inhibitor rrab | BJD13_RS07780 | Not Available | Positive | 1429177 - 1429527 | 13414.4 |
| peroxiredoxin | BJD13_RS07785 | Not Available | Positive | 1429564 - 1430046 | 17391.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
