Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pantoate--beta-alanine ligase | BJD13_RS07635 | Not Available | Negative | 1390137 - 1390979 | 30449.4 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | BJD13_RS07640 | Not Available | Negative | 1390976 - 1391791 | 28494.2 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | BJD13_RS07645 | Not Available | Negative | 1391827 - 1392312 | 17345.1 |
| polynucleotide adenylyltransferase pcnb | BJD13_RS07650 | Not Available | Negative | 1392316 - 1393683 | 51020.9 |
| Trna-glu | Not Available | Not Available | Positive | 1393733 - 1393807 | Not Available |
| gtp cyclohydrolase fole2 | BJD13_RS07660 | Not Available | Negative | 1394293 - 1395210 | 33013.5 |
| n-acetylmuramoyl-l-alanine amidase | BJD13_RS07665 | Not Available | Negative | 1395247 - 1396422 | 41795.1 |
| hypothetical protein | BJD13_RS07670 | Not Available | Positive | 1397126 - 1397560 | 15177.4 |
| mase1 domain-containing protein | BJD13_RS07675 | Not Available | Negative | 1397544 - 1399043 | 55013.7 |
| sugar porter family mfs transporter | BJD13_RS07680 | Not Available | Negative | 1399300 - 1400727 | 50302.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
