Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class i sam-dependent methyltransferase | BJD13_RS07525 | Not Available | Positive | 1366040 - 1366807 | 28227.2 |
| quinone-dependent dihydroorotate dehydrogenase | BJD13_RS07530 | Not Available | Positive | 1366813 - 1367868 | 37542.4 |
| udp-n-acetylmuramate dehydrogenase | BJD13_RS07535 | Not Available | Positive | 1367865 - 1368917 | 37817.2 |
| dmt family transporter | BJD13_RS07540 | Not Available | Positive | 1368911 - 1369822 | 33173.4 |
| aspartate/glutamate racemase family protein | BJD13_RS07545 | Not Available | Positive | 1369961 - 1370665 | 25060.3 |
| mfs transporter | BJD13_RS07550 | Not Available | Positive | 1370859 - 1372142 | 45633.2 |
| phosphatase pap2 family protein | BJD13_RS07555 | Not Available | Negative | 1372139 - 1372870 | 26481.3 |
| flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | BJD13_RS07560 | Not Available | Negative | 1372851 - 1374116 | 45161.3 |
| atp-binding protein | BJD13_RS07570 | Not Available | Positive | 1374440 - 1375666 | 43998.5 |
| response regulator transcription factor | BJD13_RS07575 | Not Available | Positive | 1375663 - 1376229 | 20642.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
