Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS07470 | Not Available | Negative | 1354067 - 1354300 | 8753.92 |
| hypothetical protein | BJD13_RS07475 | Not Available | Negative | 1354471 - 1355121 | 24656.6 |
| duf6988 family protein | BJD13_RS07480 | Not Available | Negative | 1355224 - 1355862 | 23245.5 |
| jab domain-containing protein | BJD13_RS07485 | Not Available | Negative | 1356100 - 1356579 | 17789.5 |
| hypothetical protein | BJD13_RS07490 | Not Available | Negative | 1356981 - 1357205 | 8389.03 |
| dna/rna non-specific endonuclease | BJD13_RS07495 | Not Available | Positive | 1357530 - 1358270 | 26807.4 |
| hypothetical protein | BJD13_RS07500 | Not Available | Negative | 1358381 - 1362730 | 163372.0 |
| hypothetical protein | BJD13_RS07505 | Not Available | Negative | 1362883 - 1363344 | 16716.2 |
| aldehyde dehydrogenase family protein | BJD13_RS07510 | Not Available | Positive | 1363726 - 1365258 | 54035.7 |
| duf4190 domain-containing protein | BJD13_RS07520 | Not Available | Positive | 1365753 - 1366037 | 9825.41 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
