Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uvrd-helicase domain-containing protein | BJD13_RS24620 | Not Available | Negative | 1342372 - 1344795 | 90357.0 |
| hypothetical protein | BJD13_RS07420 | Not Available | Negative | 1344867 - 1346048 | 44088.2 |
| tyrosine-type recombinase/integrase | BJD13_RS07425 | Not Available | Positive | 1346782 - 1347951 | 43803.7 |
| hypothetical protein | BJD13_RS07430 | Not Available | Positive | 1348171 - 1348419 | 9217.8 |
| hypothetical protein | BJD13_RS07435 | Not Available | Positive | 1348490 - 1348957 | 17413.0 |
| dart ssdna thymidine adp-ribosyltransferase family protein | BJD13_RS07440 | Not Available | Positive | 1349749 - 1350375 | 22971.5 |
| duf6977 family protein | BJD13_RS07445 | Not Available | Positive | 1350378 - 1351082 | 26614.7 |
| hypothetical protein | BJD13_RS24195 | Not Available | Positive | 1351290 - 1351922 | 24056.0 |
| hypothetical protein | BJD13_RS07460 | Not Available | Positive | 1352101 - 1352847 | 27487.7 |
| ankyrin repeat domain-containing protein | BJD13_RS07465 | Not Available | Negative | 1352906 - 1353973 | 38584.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
