Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bola family protein | BJD13_RS01815 | Not Available | Positive | 47517 - 47744 | 8048.74 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | BJD13_RS01820 | Not Available | Positive | 47986 - 49260 | 44397.8 |
| hypothetical protein | BJD13_RS01825 | Not Available | Positive | 49257 - 49580 | 12147.7 |
| duf3108 domain-containing protein | BJD13_RS01830 | Not Available | Negative | 50143 - 50826 | 24834.0 |
| duf3108 domain-containing protein | BJD13_RS01835 | Not Available | Negative | 50830 - 51657 | 29789.3 |
| phosphoribosylglycinamide formyltransferase | BJD13_RS01840 | Not Available | Negative | 51724 - 52392 | 23503.4 |
| hypothetical protein | BJD13_RS01845 | Not Available | Negative | 52416 - 52880 | 16531.7 |
| phosphoribosylformylglycinamidine cyclo-ligase | BJD13_RS01850 | Not Available | Negative | 52893 - 54026 | 39502.5 |
| duf2066 domain-containing protein | BJD13_RS01855 | Not Available | Positive | 54049 - 55161 | 39322.8 |
| ai-2e family transporter | BJD13_RS01860 | Not Available | Positive | 55158 - 56324 | 42262.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
