Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase domain-containing abc transporter | BJD13_RS07365 | Not Available | Negative | 1329128 - 1331344 | 81618.5 |
| hlyd family secretion protein | BJD13_RS07370 | Not Available | Negative | 1331341 - 1332639 | 47660.6 |
| zeta toxin family protein | BJD13_RS07375 | Not Available | Negative | 1332942 - 1336745 | 135636.0 |
| hypothetical protein | BJD13_RS25620 | Not Available | Negative | 1336738 - 1337055 | 11870.0 |
| type iv secretory system conjugative dna transfer family protein | BJD13_RS07385 | Not Available | Negative | 1337322 - 1339019 | 62827.9 |
| helix-turn-helix domain-containing protein | BJD13_RS07390 | Not Available | Negative | 1339182 - 1339523 | 12415.8 |
| hypothetical protein | BJD13_RS07395 | Not Available | Positive | 1339758 - 1340075 | 11462.5 |
| hypothetical protein | BJD13_RS07400 | Not Available | Positive | 1340124 - 1340516 | 15159.3 |
| moba/mobl family protein | BJD13_RS07405 | Not Available | Negative | 1340742 - 1341611 | 32200.8 |
| hypothetical protein | BJD13_RS07410 | Not Available | Positive | 1341902 - 1342375 | 18491.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
