Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is3 family transposase | BJD13_RS07265 | Not Available | Positive | 1293689 - 1294803 | 42940.5 |
| imm8 family immunity protein | BJD13_RS07270 | Not Available | Negative | 1294856 - 1295224 | 14368.6 |
| hemagglutinin repeat-containing protein | BJD13_RS07275 | Not Available | Negative | 1295232 - 1309469 | 471582.0 |
| shlb/fhac/hecb family hemolysin secretion/activation protein | BJD13_RS07280 | Not Available | Negative | 1309540 - 1311240 | 62562.0 |
| arac family transcriptional regulator | BJD13_RS07285 | Not Available | Negative | 1312025 - 1312930 | 33334.9 |
| nfed family protein | BJD13_RS25385 | Not Available | Positive | 1312814 - 1313454 | 23369.9 |
| cpbp family intramembrane glutamic endopeptidase | BJD13_RS07295 | Not Available | Positive | 1313753 - 1314304 | 19608.1 |
| Trna-arg | Not Available | Not Available | Positive | 1314744 - 1314820 | Not Available |
| site-specific integrase | BJD13_RS07310 | Not Available | Positive | 1314850 - 1316259 | 52495.9 |
| hypothetical protein | BJD13_RS07315 | Not Available | Negative | 1316278 - 1316805 | 20151.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
