Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine--trna ligase | BJD13_RS07210 | Not Available | Negative | 1283276 - 1284724 | 53515.1 |
| crp/fnr family transcriptional regulator | BJD13_RS07215 | Not Available | Positive | 1284928 - 1285593 | 24307.5 |
| murein l,d-transpeptidase catalytic domain family protein | BJD13_RS07220 | Not Available | Negative | 1285679 - 1286422 | 26515.6 |
| threonine synthase | BJD13_RS07225 | Not Available | Negative | 1286524 - 1287834 | 45385.2 |
| ethd family reductase | BJD13_RS07230 | Not Available | Positive | 1287990 - 1288304 | 11333.6 |
| homoserine kinase | BJD13_RS07235 | Not Available | Negative | 1288379 - 1289392 | 34614.4 |
| bifunctional aspartate kinase/homoserine dehydrogenase i | BJD13_RS07240 | Not Available | Negative | 1289389 - 1291896 | 89208.2 |
| tspo/mbr family protein | BJD13_RS07245 | Not Available | Negative | 1292486 - 1292986 | 18421.7 |
| hypothetical protein | BJD13_RS07250 | Not Available | Negative | 1293015 - 1293299 | 10888.8 |
| hypothetical protein | BJD13_RS25140 | Not Available | Negative | 1293327 - 1293617 | 10251.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
