Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| calcineurin-like phosphoesterase c-terminal domain-containing protein | BJD13_RS07160 | Not Available | Negative | 1273841 - 1275427 | 57752.6 |
| bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisie | BJD13_RS07165 | Not Available | Negative | 1275597 - 1276217 | 22213.4 |
| imidazole glycerol phosphate synthase subunit hisf | BJD13_RS07170 | Not Available | Negative | 1276207 - 1276983 | 28283.9 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | BJD13_RS07175 | Not Available | Negative | 1276977 - 1277711 | 25811.0 |
| imidazole glycerol phosphate synthase subunit hish | BJD13_RS07180 | Not Available | Negative | 1277708 - 1278310 | 21238.0 |
| bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisb | BJD13_RS07185 | Not Available | Negative | 1278307 - 1279434 | 42014.8 |
| histidinol-phosphate transaminase | BJD13_RS07190 | Not Available | Negative | 1279431 - 1280522 | 38619.4 |
| histidinol dehydrogenase | BJD13_RS07195 | Not Available | Negative | 1280519 - 1281814 | 44591.4 |
| atp phosphoribosyltransferase | BJD13_RS07200 | Not Available | Negative | 1281811 - 1282725 | 32861.8 |
| yerc/yecd family trpr-related protein | BJD13_RS07205 | Not Available | Negative | 1282735 - 1283061 | 11764.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
