Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2388 domain-containing protein | BJD13_RS07110 | Not Available | Negative | 1263011 - 1263310 | 9888.63 |
| fad-binding oxidoreductase | BJD13_RS07115 | Not Available | Negative | 1263345 - 1264763 | 50976.9 |
| phosphoglycerate dehydrogenase | BJD13_RS07120 | Not Available | Positive | 1264972 - 1266213 | 43918.7 |
| nudix hydrolase | BJD13_RS07125 | Not Available | Negative | 1266363 - 1266953 | 22203.0 |
| amino acid permease | BJD13_RS07130 | Not Available | Positive | 1267097 - 1268569 | 51686.3 |
| amino acid permease | BJD13_RS07135 | Not Available | Positive | 1268646 - 1270076 | 50846.5 |
| methylthioribulose 1-phosphate dehydratase | BJD13_RS07140 | Not Available | Positive | 1270166 - 1270819 | 24234.0 |
| 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase | BJD13_RS07145 | Not Available | Positive | 1270855 - 1271421 | 21259.9 |
| acireductone synthase | BJD13_RS07150 | Not Available | Positive | 1271424 - 1272122 | 25906.5 |
| c13 family peptidase | BJD13_RS07155 | Not Available | Positive | 1272307 - 1273383 | 38342.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
