Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf6587 family protein | BJD13_RS07060 | Not Available | Negative | 1254313 - 1254567 | 8920.24 |
| ferrous iron transporter b | BJD13_RS07065 | Not Available | Negative | 1254569 - 1256428 | 66853.6 |
| feoa family protein | BJD13_RS07070 | Not Available | Negative | 1256425 - 1256673 | 8924.78 |
| enoyl-coa hydratase-related protein | BJD13_RS07075 | Not Available | Positive | 1256788 - 1257585 | 27569.3 |
| voc family protein | BJD13_RS07080 | Not Available | Positive | 1257582 - 1257971 | 13556.9 |
| hydroxymethylglutaryl-coa lyase | BJD13_RS07085 | Not Available | Positive | 1258078 - 1258974 | 30962.1 |
| sdr family nad(p)-dependent oxidoreductase | BJD13_RS07090 | Not Available | Positive | 1259112 - 1259882 | 26187.7 |
| elongation factor p-like protein yeip | BJD13_RS07095 | Not Available | Positive | 1259983 - 1260549 | 20654.3 |
| hypothetical protein | BJD13_RS07100 | Not Available | Positive | 1260549 - 1260935 | 14188.8 |
| duf4105 domain-containing protein | BJD13_RS07105 | Not Available | Negative | 1261155 - 1263014 | 68727.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
