Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| single-stranded-dna-specific exonuclease recj | BJD13_RS07005 | Not Available | Negative | 1242015 - 1243754 | 61628.6 |
| hypothetical protein | BJD13_RS07010 | Not Available | Negative | 1243751 - 1244671 | 33265.7 |
| transcription elongation factor grea | BJD13_RS07015 | Not Available | Negative | 1244688 - 1245152 | 16903.0 |
| carbamoyl-phosphate synthase large subunit | BJD13_RS07020 | Not Available | Negative | 1245161 - 1248403 | 117321.0 |
| hypothetical protein | BJD13_RS07025 | Not Available | Negative | 1248412 - 1248855 | 15732.8 |
| glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit | BJD13_RS07030 | Not Available | Negative | 1248855 - 1249979 | 40173.1 |
| 4-hydroxy-tetrahydrodipicolinate reductase | BJD13_RS07035 | Not Available | Negative | 1250220 - 1250936 | 24784.8 |
| mosc domain-containing protein | BJD13_RS07045 | Not Available | Negative | 1251608 - 1252327 | 26418.4 |
| plp-dependent aminotransferase family protein | BJD13_RS07050 | Not Available | Negative | 1252324 - 1253526 | 43368.4 |
| hypothetical protein | BJD13_RS07055 | Not Available | Negative | 1253752 - 1254252 | 18791.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
