Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cher family methyltransferase | BJD13_RS06910 | Not Available | Positive | 1216177 - 1217037 | 32246.4 |
| chemoreceptor glutamine deamidase ched | BJD13_RS06915 | Not Available | Positive | 1217040 - 1217636 | 21694.2 |
| protein-glutamate methylesterase/protein-glutamine glutaminase | BJD13_RS06920 | Not Available | Positive | 1217633 - 1218709 | 38030.3 |
| eal domain-containing protein | BJD13_RS06925 | Not Available | Positive | 1218788 - 1221076 | 83845.5 |
| alpha/beta fold hydrolase | BJD13_RS06930 | Not Available | Negative | 1221479 - 1222324 | 30301.9 |
| bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase | BJD13_RS06935 | Not Available | Negative | 1222519 - 1225110 | 92752.3 |
| type ii toxin-antitoxin system vapc family toxin | BJD13_RS06940 | Not Available | Negative | 1225161 - 1225571 | 14781.0 |
| abrb/maze/spovt family dna-binding domain-containing protein | BJD13_RS06945 | Not Available | Negative | 1225568 - 1225816 | 8859.91 |
| aconitate hydratase acna | BJD13_RS06950 | Not Available | Positive | 1225964 - 1228732 | 99108.2 |
| nfed family protein | BJD13_RS24955 | Not Available | Positive | 1228867 - 1229104 | 8408.82 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
