Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rnase adapter rapz | BJD13_RS01765 | Not Available | Negative | 39855 - 40727 | 32953.0 |
| hpr(ser) kinase/phosphatase | BJD13_RS01770 | Not Available | Negative | 40724 - 41674 | 35115.4 |
| pts sugar transporter subunit iia | BJD13_RS01775 | Not Available | Negative | 41671 - 42129 | 16077.2 |
| ribosome hibernation-promoting factor, hpf/yfia family | BJD13_RS01780 | Not Available | Negative | 42151 - 42468 | 12094.6 |
| rna polymerase factor sigma-54 | BJD13_RS01785 | Not Available | Negative | 42556 - 43953 | 50706.1 |
| lps export abc transporter atp-binding protein | BJD13_RS01790 | Not Available | Negative | 44036 - 44755 | 26203.1 |
| lipopolysaccharide transport periplasmic protein lpta | BJD13_RS01795 | Not Available | Negative | 44755 - 45315 | 19802.7 |
| lps export abc transporter periplasmic protein lptc | BJD13_RS01800 | Not Available | Negative | 45293 - 45868 | 21162.1 |
| kdsc family phosphatase | BJD13_RS01805 | Not Available | Negative | 45865 - 46413 | 19604.6 |
| kpsf/gutq family sugar-phosphate isomerase | BJD13_RS01810 | Not Available | Negative | 46462 - 47463 | 34809.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
