Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fkbm family methyltransferase | BJD13_RS06540 | Not Available | Positive | 1112321 - 1113538 | 45301.7 |
| polysaccharide pyruvyl transferase family protein | BJD13_RS06545 | Not Available | Positive | 1113566 - 1114936 | 51765.8 |
| glycosyltransferase | BJD13_RS06550 | Not Available | Positive | 1114933 - 1118457 | 128494.0 |
| flagellar hook-basal body complex protein flie | BJD13_RS06555 | Not Available | Positive | 1118678 - 1119049 | 12859.3 |
| flagellar basal-body ms-ring/collar protein flif | BJD13_RS06560 | Not Available | Positive | 1119063 - 1120787 | 61772.4 |
| flagellar motor switch protein flig | BJD13_RS06565 | Not Available | Positive | 1120798 - 1121787 | 35301.8 |
| flih/sctl family protein | BJD13_RS06570 | Not Available | Positive | 1121784 - 1122404 | 22140.4 |
| flii/yscn family atpase | BJD13_RS06575 | Not Available | Positive | 1122401 - 1123777 | 48763.7 |
| flagellar export protein flij | BJD13_RS06580 | Not Available | Positive | 1123781 - 1124236 | 17464.6 |
| flagellar hook-length control protein flik | BJD13_RS06585 | Not Available | Positive | 1124233 - 1125525 | 42442.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
