Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar assembly peptidoglycan hydrolase flgj | BJD13_RS06440 | Not Available | Positive | 1092842 - 1094020 | 40173.0 |
| flagellar hook-associated protein flgk | BJD13_RS06445 | Not Available | Positive | 1094032 - 1095906 | 63356.1 |
| flagellar hook-associated protein flgl | BJD13_RS06450 | Not Available | Positive | 1095906 - 1097111 | 42020.8 |
| flagellin | BJD13_RS06455 | Not Available | Positive | 1097429 - 1098628 | 40426.0 |
| flagellar filament capping protein flid | BJD13_RS06460 | Not Available | Positive | 1098900 - 1100225 | 44517.0 |
| flagellar export chaperone flis | BJD13_RS06465 | Not Available | Positive | 1100376 - 1100789 | 14657.3 |
| hypothetical protein | BJD13_RS06470 | Not Available | Positive | 1100798 - 1101091 | 11406.8 |
| pilz domain-containing protein | BJD13_RS06475 | Not Available | Positive | 1101091 - 1101657 | 20404.4 |
| response regulator transcription factor | BJD13_RS06480 | Not Available | Positive | 1101726 - 1102358 | 22741.9 |
| rna polymerase factor sigma-54 | BJD13_RS06485 | Not Available | Positive | 1102575 - 1103978 | 51189.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
