Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polysaccharide lyase family 1 protein | BJD13_RS01710 | Not Available | Positive | 26746 - 27807 | 37462.9 |
| amino acid permease | BJD13_RS01715 | Not Available | Positive | 28219 - 29607 | 47613.8 |
| dipeptidase | BJD13_RS01720 | Not Available | Positive | 30204 - 31433 | 44599.4 |
| cytochrome ubiquinol oxidase subunit i | BJD13_RS01725 | Not Available | Positive | 31710 - 33110 | 51451.5 |
| cytochrome d ubiquinol oxidase subunit ii | BJD13_RS01730 | Not Available | Positive | 33110 - 34126 | 37051.4 |
| prolyl oligopeptidase family serine peptidase | BJD13_RS01735 | Not Available | Negative | 34187 - 34924 | 27471.7 |
| magnesium transporter | BJD13_RS01740 | Not Available | Negative | 35126 - 36487 | 49293.8 |
| phosphoenolpyruvate--protein phosphotransferase | BJD13_RS01750 | Not Available | Negative | 36895 - 38625 | 63341.6 |
| hpr family phosphocarrier protein | BJD13_RS01755 | Not Available | Negative | 38684 - 38953 | 9675.62 |
| pts sugar transporter subunit iia | BJD13_RS01760 | Not Available | Negative | 38946 - 39338 | 13565.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
