Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| eal domain-containing protein | BST98_RS04950 | Not Available | Negative | 990788 - 991723 | 35270.1 |
| cupin domain-containing protein | BST98_RS04955 | Not Available | Negative | 991966 - 993099 | 43322.6 |
| duf1294 domain-containing protein | BST98_RS04960 | Not Available | Positive | 993346 - 993708 | 13968.9 |
| nadh:flavorubredoxin reductase norw | BST98_RS04965 | Not Available | Negative | 993785 - 994936 | 41393.8 |
| anaerobic nitric oxide reductase flavorubredoxin | BST98_RS04970 | Not Available | Negative | 994961 - 996448 | 55354.7 |
| adenylosuccinate lyase | BST98_RS04975 | Not Available | Negative | 996712 - 998079 | 51290.3 |
| high frequency lysogenization protein hfld | BST98_RS04980 | Not Available | Negative | 998162 - 998782 | 22932.1 |
| trna 2-thiouridine(34) synthase mnma | BST98_RS04985 | Not Available | Negative | 998798 - 999910 | 41529.2 |
| pseudouridine synthase | BST98_RS04990 | Not Available | Negative | 1000187 - 1000834 | 24656.9 |
| nadp-dependent isocitrate dehydrogenase | BST98_RS04995 | Not Available | Positive | 1000977 - 1002230 | 45688.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

