Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ggdef domain-containing protein | BST98_RS04640 | Not Available | Negative | 919161 - 920777 | 62255.9 |
| hypothetical protein | BST98_RS04645 | Not Available | Positive | 921028 - 921288 | 10212.9 |
| duf3413 domain-containing protein | BST98_RS04650 | Not Available | Negative | 921329 - 923197 | 71373.1 |
| duf1414 domain-containing protein | BST98_RS04655 | Not Available | Negative | 923245 - 923463 | 7888.57 |
| nucleoid-associated protein yejk | BST98_RS04660 | Not Available | Positive | 923540 - 924553 | 38361.0 |
| nitrous oxide-stimulated promoter family protein | BST98_RS04665 | Not Available | Positive | 924853 - 925218 | 13973.2 |
| flavodoxin flda | BST98_RS04670 | Not Available | Negative | 925375 - 925863 | 17851.6 |
| pyruvate:ferredoxin (flavodoxin) oxidoreductase | BST98_RS04675 | Not Available | Negative | 925875 - 929432 | 130628.0 |
| hydroxylamine reductase | BST98_RS04680 | Not Available | Negative | 929593 - 930936 | 48686.5 |
| m20 family metallopeptidase | BST98_RS04685 | Not Available | Negative | 931202 - 932326 | 40114.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

