Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tim44 domain-containing protein | BST98_RS04495 | Not Available | Positive | 885368 - 886225 | 31388.6 |
| tigr02647 family protein | BST98_RS04500 | Not Available | Positive | 886478 - 886723 | 8869.73 |
| ykgj family cysteine cluster protein | BST98_RS04505 | Not Available | Negative | 886743 - 886997 | 8966.94 |
| ycgn family cysteine cluster protein | BST98_RS04510 | Not Available | Positive | 887263 - 887700 | 16941.7 |
| hypothetical protein | BST98_RS22585 | Not Available | Positive | 887877 - 888011 | 5133.46 |
| cpbp family intramembrane glutamic endopeptidase | BST98_RS04515 | Not Available | Positive | 888212 - 889063 | 31316.8 |
| mbl fold metallo-hydrolase | BST98_RS04520 | Not Available | Negative | 889191 - 890174 | 36206.9 |
| neutral zinc metallopeptidase | BST98_RS04525 | Not Available | Negative | 890456 - 891319 | 31370.2 |
| trna dihydrouridine(16) synthase dusc | BST98_RS04530 | Not Available | Negative | 891560 - 892504 | 35403.6 |
| sec-c metal-binding domain-containing protein | BST98_RS04535 | Not Available | Positive | 892688 - 893311 | 22976.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

