Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anti-phage deoxyguanosine triphosphatase | BST98_RS04445 | Not Available | Negative | 872119 - 873447 | 50753.7 |
| 5'-deoxynucleotidase | BST98_RS04450 | Not Available | Negative | 873447 - 874031 | 22276.8 |
| pyridoxal phosphate-dependent aminotransferase | BST98_RS04455 | Not Available | Negative | 874141 - 875355 | 45449.1 |
| isochorismate synthase menf | BST98_RS04460 | Not Available | Positive | 875824 - 877191 | 51604.4 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | BST98_RS04465 | Not Available | Positive | 877173 - 878948 | 63877.2 |
| 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase | BST98_RS04470 | Not Available | Positive | 878932 - 879756 | 30380.4 |
| o-succinylbenzoate synthase | BST98_RS04475 | Not Available | Positive | 879809 - 880783 | 35718.8 |
| o-succinylbenzoate--coa ligase | BST98_RS04480 | Not Available | Positive | 880771 - 882201 | 52998.5 |
| mfs transporter | BST98_RS04485 | Not Available | Negative | 882286 - 884163 | 69544.6 |
| tetr/acrr family transcriptional regulator | BST98_RS04490 | Not Available | Negative | 884178 - 884774 | 22738.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

