Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trigger factor | BST98_RS04390 | Not Available | Positive | 861008 - 862306 | 47520.9 |
| atp-dependent clp endopeptidase proteolytic subunit clpp | BST98_RS04395 | Not Available | Positive | 862412 - 863035 | 22932.6 |
| atp-dependent protease atp-binding subunit clpx | BST98_RS04400 | Not Available | Positive | 863148 - 864428 | 46816.0 |
| endopeptidase la | BST98_RS04405 | Not Available | Positive | 864654 - 867017 | 87858.6 |
| nucleoid-associated protein hu-beta | BST98_RS04410 | Not Available | Positive | 867218 - 867490 | 9362.11 |
| peptidylprolyl isomerase | BST98_RS04415 | Not Available | Positive | 867841 - 869739 | 70326.5 |
| comea family dna-binding protein | BST98_RS04420 | Not Available | Positive | 869902 - 870189 | 10428.7 |
| duf1971 domain-containing protein | BST98_RS04425 | Not Available | Negative | 870274 - 870612 | 12709.9 |
| rhombosortase | BST98_RS04430 | Not Available | Negative | 870699 - 871256 | 20364.0 |
| pp_00752 | BST98_RS04435 | Not Available | Positive | 871266 - 871886 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

