Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cvpa family protein | BST98_RS04340 | Not Available | Positive | 850376 - 850867 | 17997.2 |
| amidophosphoribosyltransferase | BST98_RS04345 | Not Available | Positive | 850937 - 852454 | 55900.7 |
| yip1 family protein | BST98_RS04350 | Not Available | Negative | 852599 - 853198 | 22125.6 |
| lysr family transcriptional regulator | BST98_RS04355 | Not Available | Negative | 853495 - 854370 | 33361.2 |
| response regulator | BST98_RS04360 | Not Available | Positive | 854693 - 855745 | 38880.8 |
| peptide mfs transporter | BST98_RS04365 | Not Available | Negative | 855799 - 857187 | 49928.9 |
| transcription/translation regulatory transformer protein rfah | BST98_RS04370 | Not Available | Positive | 857623 - 858120 | 19138.0 |
| utp--glucose-1-phosphate uridylyltransferase galu | BST98_RS04375 | Not Available | Positive | 858208 - 859110 | 32400.3 |
| bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase fold | BST98_RS04380 | Not Available | Negative | 859302 - 860162 | 30755.4 |
| Trna-arg | Not Available | Not Available | Positive | 860420 - 860496 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

