Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphomannomutase | BST98_RS04235 | Not Available | Positive | 821163 - 822587 | 52207.4 |
| glycosyltransferase family 4 protein | BST98_RS04240 | Not Available | Positive | 822584 - 823705 | 41875.2 |
| nucleotide sugar dehydrogenase | BST98_RS04245 | Not Available | Positive | 823707 - 824873 | 43441.9 |
| nad-dependent epimerase | BST98_RS04250 | Not Available | Positive | 824937 - 825941 | 37819.8 |
| utp--glucose-1-phosphate uridylyltransferase galu | BST98_RS04255 | Not Available | Positive | 826011 - 826904 | 32480.5 |
| hypothetical protein | BST98_RS04260 | Not Available | Negative | 827090 - 827932 | 32239.1 |
| n-acetylmuramoyl-l-alanine amidase | BST98_RS04265 | Not Available | Negative | 828084 - 828701 | 23352.9 |
| mbl fold metallo-hydrolase rna specificity domain-containing protein | BST98_RS04270 | Not Available | Positive | 829356 - 830882 | 56593.4 |
| four helix bundle protein | BST98_RS04275 | Not Available | Positive | 830883 - 831236 | 13709.8 |
| fad-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase mnmc | BST98_RS04280 | Not Available | Negative | 831332 - 833632 | 84797.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

