Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| epsg family protein | BST98_RS04135 | Not Available | Positive | 798652 - 799839 | 46827.9 |
| glycosyltransferase | BST98_RS04140 | Not Available | Positive | 799876 - 800685 | 31175.1 |
| exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase | BST98_RS04145 | Not Available | Positive | 800714 - 801964 | 47200.1 |
| atpase | BST98_RS04150 | Not Available | Positive | 802018 - 802215 | 7496.89 |
| ompa family protein | BST98_RS04155 | Not Available | Negative | 802550 - 803518 | 34492.1 |
| yjbh domain-containing protein | BST98_RS04160 | Not Available | Negative | 803890 - 806103 | 83307.8 |
| capsule biosynthesis gfcc family protein | BST98_RS04165 | Not Available | Negative | 806103 - 806921 | 30805.7 |
| yjbf family lipoprotein | BST98_RS04170 | Not Available | Negative | 806938 - 807639 | 25910.4 |
| hypothetical protein | BST98_RS04175 | Not Available | Negative | 807768 - 807995 | 6832.92 |
| polysaccharide export protein | BST98_RS04180 | Not Available | Positive | 808564 - 809718 | 42063.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

