Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter periplasmic adaptor subunit | BST98_RS04030 | Not Available | Positive | 776415 - 777524 | 39644.5 |
| multidrug efflux rnd transporter permease subunit | BST98_RS04035 | Not Available | Positive | 777524 - 780646 | 113551.0 |
| porin family protein | BST98_RS04040 | Not Available | Negative | 780907 - 781512 | 22380.4 |
| pts fructose transporter subunit iib | BST98_RS04045 | Not Available | Positive | 781683 - 781991 | 10946.4 |
| pts sugar transporter subunit iia | BST98_RS04050 | Not Available | Positive | 782012 - 782818 | 30305.6 |
| arac family transcriptional regulator | BST98_RS04055 | Not Available | Positive | 782815 - 783657 | 32684.3 |
| mannose-6-phosphate isomerase, class i | BST98_RS04060 | Not Available | Positive | 783834 - 785033 | 43836.8 |
| phospholipase a | BST98_RS04065 | Not Available | Positive | 785318 - 786154 | 31862.9 |
| fructose-specific pts transporter subunit eiic | BST98_RS04075 | Not Available | Positive | 786695 - 788599 | 65752.8 |
| chorismate synthase | BST98_RS04080 | Not Available | Positive | 788862 - 789950 | 39366.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

