Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | strain Phdp Wu-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Coccus |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | Italian aquaculture; Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Alca torda |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae strain Phdp Wu-1 chromosome 1, complete
Gene Summary
Adenine Count
929587 bp
Thymine Count
931950 bp
Guanine Count
663051 bp
Cytosine Count
665361 bp
Genome Length
3189949 bp
Protein-coding Genes
2659 genes
Non-Coding Genes
265 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| eve domain-containing protein | BST98_RS00355 | Not Available | Positive | 73422 - 73880 | 17579.1 |
| cof-type had-iib family hydrolase | BST98_RS00360 | Not Available | Negative | 73948 - 74745 | 29435.1 |
| alpha/beta fold hydrolase | BST98_RS00365 | Not Available | Negative | 74897 - 75889 | 37884.9 |
| homoserine/homoserine lactone efflux protein | BST98_RS00370 | Not Available | Positive | 76049 - 76666 | 21886.3 |
| dps family protein | BST98_RS00375 | Not Available | Negative | 76918 - 77394 | 18311.9 |
| patatin family protein | BST98_RS00380 | Not Available | Negative | 77531 - 78424 | 33147.5 |
| lysr family transcriptional regulator | BST98_RS00385 | Not Available | Negative | 78520 - 79368 | 31778.8 |
| abgt family transporter | BST98_RS00390 | Not Available | Negative | 79481 - 81082 | 56703.5 |
| sdr family oxidoreductase | BST98_RS00395 | Not Available | Positive | 81556 - 82278 | 25959.4 |
| acyltransferase | BST98_RS00400 | Not Available | Positive | 82378 - 83391 | 38668.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

